PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla005676
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family YABBY
Protein Properties Length: 188aa    MW: 20777.7 Da    PI: 8.4966
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla005676genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY189.12.1e-58221846161
      YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee...........lleelkveeenlksnvekeesast 94 
                sseq+Cyv+Cn C+t+lavsvP +slfk vtvrCG+C++ll vn+   + ll+++++++  + ++            lee  +++ n + n  +++++  
  Cla005676  22 SSEQLCYVHCNICDTVLAVSVPCSSLFKRVTVRCGYCANLLPVNMCGGM-LLPSSNQFHG-FAHStpnflspnthnFLEEISNSNPNPNPNFLMNQAEGI 119
                79*****************************************998765.5566665433.322213454444333333333333333333333333222 PP

      YABBY  95 svsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWa 161
                     ++ +   +++pr+pp ++rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaakn +
  Cla005676 120 ---DLTMATRVANDLPRQPPsINRPPEKRQRVPSAYNRFIKEEIQRIKAANPDISHREAFSAAAKNVS 184
                ...2345888999999999989********************************************75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.9E-5922186IPR006780YABBY protein
SuperFamilySSF470951.1E-6133180IPR009071High mobility group box domain
CDDcd000841.46E-4147174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MSSSSIPNTF SQVPPPLLPP PSSEQLCYVH CNICDTVLAV SVPCSSLFKR VTVRCGYCAN  60
LLPVNMCGGM LLPSSNQFHG FAHSTPNFLS PNTHNFLEEI SNSNPNPNPN FLMNQAEGID  120
LTMATRVAND LPRQPPSINR PPEKRQRVPS AYNRFIKEEI QRIKAANPDI SHREAFSAAA  180
KNVSRYII
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818601e-35LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132601e-35LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004150647.11e-107PREDICTED: protein YABBY 4 isoform X2
SwissprotA2X7Q31e-54YAB4_ORYSI; Protein YABBY 4
SwissprotQ6H6681e-54YAB4_ORYSJ; Protein YABBY 4
TrEMBLA0A0A0L1N81e-107A0A0A0L1N8_CUCSA; Uncharacterized protein
STRINGVIT_02s0154g00070.t012e-71(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20403490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-49YABBY family protein